For bibliometrics, see Thomas's google scholar profile. You can find a summary of our research contributions here. Links to our software are available here & github.
Preprints
- Do Deep Neural Networks Outperform Kernel Regression For Functional Connectivity Prediction of Behavior? He T, Kong R, Holmes AJ, Nguyen M, Sabuncu MR, Eickhoff SB, Bzdok D, Feng J, Yeo BTT. [preprint]
- Multi-modal Latent Factor Exploration of Atrophy, Cognitive and Tau Heterogeneity in Typical Late-Onset Alzheimer's Disease. Sun N, Mormino EC, Chen J, Sabuncu MR, Yeo BTT, [preprint]
- Dynamic mode decomposition of resting-state and task fMRI. Carsorso J, Kong X, Wang C, Van De Ville D, Yeo BTT, Liegeois R. [preprint]
- Beyond consensus: embracing heterogeneity in neuroimaging meta-analysis. Ngo GN, Eickhoff SB, Fox PT, Spreng RN, Yeo BTT. [preprint]
Journals / Perspectives (* Equal Contributions)
- Spatial topography of individual-specific cortical networks predicts human cognition, personality and emotion. Kong R, Li J, Orban C, Sabuncu MR, Liu H, Schaefer A, Sun N, Zuo XN, Holmes A, Eickhoff SB, Yeo BTT. Cerebral Cortex, in press [pdf]
- Individual-specific fMRI-subspaces improve functional connectivity prediction of behavior. Kashyap R, Kong R, Bhattacharjee S, Li J, Zhou J, Yeo BTT. NeuroImage, in press
- Inversion of a large-scale circuit model reveals a cortical hierarchy in the dynamic resting human brain. Wang P, Kong R, Kong X, Liegeois R, Orban C, Deco G, van den Heuvel M, Yeo BTT. Science Advances, 5:eaat7854, 2019 [free download]
- Subspecialization within default mode nodes characterized in 10,000 UK Biobank participants. Kernbach JM, Yeo BTT, Smallwood J, Margulies DS, Thiebaut de Schotten M. Walter H, Sabuncu MR, Holmes AJ, Gramfort A, Varoquaux G, Thirion B, Bzdok D. Proceedings of the National Academy of Sciences USA, 115:12295-12300, 2018 [pdf]
- Imaging-based parcellations of the human brain. Eickhoff SB, Yeo BTT, Genon S. Nature Reviews Neuroscience, 19:672-686, 2018 [pdf]
- A mechanistic model of connector hubs, modularity and cognition. Bertolero MA, Yeo BTT, Bassett DS, D'Esposito M. Nature Human Behavior, 2:765-777, 2018 http://doi.org/10.1038/s41562-018-0420-6 [pdf]
- Local-Global parcellation of the human cerebral cortex from intrinsic functional connectivity MRI. Schaefer AL, Kong Ru, Gordon EM, Laumann TO, Zuo XN, Holmes AL, Eickhoff SB, Yeo BTT. Cerebral Cortex, 29:3095-3114, 2018 [pdf]
- Accurate nonlinear mapping between MNI volumetric and FreeSurfer surface coordinate systems. Wu J, Ngo GH, Greve DN, Li J, He T, Fischl B, Eickhoff SB, Yeo BTT. Human Brain Mapping, 39:3793–3808, 2018 [pdf]
- Gene expression links functional networks across cortex and striatum. Anderson KM, Krienen FM, Choi EY, Reinen JM, Yeo BTT, Holmes AJ. Nature Communications 9:1428, 2018 [pdf]
- Topographic organization of the cerebral cortex and brain cartography. Eickhoff SB, Constable RT, Yeo BTT. NeuroImage, 170:332–347, 2018 [pdf]
- The human cortex possesses a reconfigurable dynamic network architecture that is disrupted in psychosis. Reinen JM, Chen OY, Hutchison RM, Yeo BTT, Anderson KM, Sabuncu MR, Öngür D, Roffman JL, Smoller JW, Baker JT, Holmes AJ. Nature Communications 9:1157, 2018 [pdf]
- Interpreting temporal fluctuations in resting-state functional connectivity MRI. Liegeois R, Laumann TO, Snyder AZ, Zhou HJ, Yeo BTT. Neuroimage 163:437–455, 2017 [pdf]
- The diverse club. Bertolero MA, Yeo BTT, D'Esposito M. Nature Communications 8:1277, 2017 [pdf]
- Data-driven extraction of a nested model of human brain function. Bolt T, Nomi JS, Yeo BTT, Uddin LQ. Journal of Neuroscience, 37:7263–7277, 2017 [pdf]
- Inference in the age of big data: future perspectives on neuroscience. Bzdok D, Yeo BTT. NeuroImage, 155:549-564, 2017 [pdf]
- Proportional thresholding in resting-state fMRI functional connectivity networks and consequences for patient-control connectome studies: issues and recommendations. Van den Heuvel M, de Lange S, Zalesky A, Seguin C, Yeo BTT, R Schmidt. NeuroImage, 152:437-449, 2017 [pdf]
- A spotlight on bridging microscale and macroscale human brain architecture. Van den Heuvel M, Yeo BTT. Neuron, 93:1248-1251, 2017 [pdf]
- Best practices in data analysis and sharing in neuroimaging using MRI. Nichols TE, Das S, Eickhoff SB, Evans AC, Glatard T, Hanke M, Kriegeskorte N, Milham MP, Poldrack RA, Poline JB, Proal E, Thirion B, Van Essen DC, White T, Yeo BTT. Nature Neuroscience, 20:299-303, 2017 [pdf]
- Bayesian model reveals latent atrophy factors with dissociable cognitive trajectories in Alzheimer’s disease. Zhang XM, Mormino EC, Sun N, Sperling RA, Sabuncu MR, Yeo BTT. Proceedings of the National Academy of Sciences USA, 113:E6535–E6544, 2016 [free download] [NUS press release] [MGH press release] [science daily] [upi]
- A modern map of the human cerebral cortex. Yeo BTT, Eickhoff SB. Nature, 536:152-154, 2016 [pdf] [scientific american, huffington post, vice, popular science, geekwire]
- Cerebral functional connectivity periodically (de)synchronizes with anatomical constraints.Liegeois R, Ziegler E, Phillips C, Geurts P, Gomez F, Bahri MA, Yeo BTT, Soddu A, Vanhaudenhuyse A, Laureys S, Sepulchre R. Brain Struct Func, 221:2985-2997, 2016 [pdf]
- Transcriptional profiles of supragranular-enriched genes associate with corticocortical network architecture in the human brain. Krienen FM, Yeo BTT, Ge T, Buckner RL, Sherwood C. Proceedings of the National Academy of Sciences USA, 113:E469-E478, 2016 [pdf] [supp] [popular press]
- The modular and integrative functional architecture of the human brain. Bertolero MA, Yeo BTT, D'Esposito M. Proceedings of the National Academy of Sciences USA, 112:E6798-E6807, 2015 [pdf] [Berkeley press release]
- From phenotypic chaos to neurobiological order. Holmes AJ, Yeo BTT. Nature Neuroscience, 18:1532-1534, 2015 [pdf}
- Functional specialization and flexibility in human association cortex. Yeo BTT, Krienen FM, Eickhoff SB, Yaakub SN, Fox PT, Buckner RL, Asplund CL, Chee MWL. Cerebral Cortex, 25:3654-3672, 2015 [pdf] [supp] [maps in MNI and surface space] [interactive ontology]
- Co-activated yet disconnected - neural correlates of eye closure when trying to stay awake. Ong JL, Kong D, Chia TTY, Tandi J, Yeo BTT. Neuroimage, 118:553-562, 2015 [pdf]
- Functional connectivity during rested wakefulness predicts vulnerability to sleep deprivation. Yeo BTT, Tandi J, Chee MWL. Neuroimage, 111:147-158, 2015 [pdf]
- Reconfigurable state-dependent functional coupling modes cluster around a core functional architecture.Krienen FM, Yeo BTT, Buckner RL. Philosophical Transactions of the Royal Society B, 369:20130526, 2014 [pdf]
- Borders, map clusters, and supra-areal organization of the visual cortex. Buckner RL, Yeo BTT. Neuroimage, 93: 293-297, 2014 [pdf]
- Estimates of segregation and overlap of functional connectivity networks in the human cerebral cortex. Yeo BTT, Krienen FM, Chee MWL, Buckner RL. Neuroimage, 88: 212-227, 2014 [pdf]
- Disruption of cortical association networks in schizophrenia and psychotic bipolar disorder. Baker JT, Holmes AJ, Masters GA, Yeo BTT, Krienen FM, Buckner RL, Öngür D. JAMA Psychiatry, 71:109-118, 2014 [pdf]
- Opportunities and limitations of functional connectivity MRI. Buckner RL, Krienen FM, Yeo BTT. Nature Neuroscience, 16:832-837, 2013 [pdf]
- Individual variability in functional connectivity architecture of the human brain. Mueller S, Wang D, Fox MD, Yeo BTT, Sepulcre J, Sabuncu M, Shafee R, Lu J, Liu H. Neuron, 3:586-595, 2013 [pdf]
- On removing interpolation and resampling artifacts in rigid image registration. Aganj I, Yeo BTT, Sabuncu MR, Fischl B. IEEE Trans on Image Processing, 22:816-827, 2013 [pdf]
- The organization of the human striatum revealed by intrinsic functional connectivity. Choi EY, Yeo BTT, Buckner RL. J Neurophysiology, 108:2242-2263, 2012 [pdf] [COVER]
- Stepwise connectivity of the modal cortex reveals the multimodal organization of the human brain. Sepulcre J, Sabuncu MR, Yeo TB, Liu H, Johnson KA. J Neuroscience, 32:10649–10661, 2012 [pdf]
- Measuring and comparing brain cortical surface area and other areal quantities. Anderson MW, Sabuncu MR, Yeo BTT, Fischl B, Greve DN, Kochunov P, Nichols TE, Blangero J, Glahn DC. Neuroimage, 61:1428–1443, 2012 [pdf]
- The organization of the human cerebellum revealed by intrinsic functional connectivity. Buckner RL, Krienen FM, Castellanos A, Diaz JC, Yeo BTT. J Neurophysiology, 106:2322-2345, 2011 [pdf] [movies] [parcellations in MNI Space]
- The organization of the human cerebral cortex revealed by intrinsic functional connectivity. Yeo BTT*, Krienen FM*, Sepulcre J, Sabuncu MR, Lashkari L, Hollinshead M, Roffman JL, Smoller JW, Zöllei L, Polimeni JM, Fischl B, Liu H, Buckner RL. J Neurophysiology, 106:1125–1165, 2011 [pdf] [movies] [parcellations in MNI and FreeSurfer Space] [parcellations in Caret Space] [Recommended by Faculty of 1000]
- The dynamics of cortical and hippocampal atrophy in Alzheimer’s disease. Sabuncu MR, Desikan RS, Sepulcre J, Yeo BTT, Liu H, Schmansky N, Reuter M, Weiner MW, Buckner RL, Sperling RA, Fischl B. Archives of Neurology, 68:1040–1048, 2011 [pdf]
- A Generative Model for Image Segmentation Based on Label Fusion. Sabuncu MR*, Yeo BTT*, Van Leemput K, Fischl B, Golland P. IEEE Trans on Medical Imaging, 29:1714--1729, 2010 [pdf] [code]
- Learning Task-Optimal Registration Cost Functions for Localizing Cytoarchitecture and Function in the Cerebral Cortex. Yeo BTT, Sabuncu MR, Vercauteren T, Holt D, Amunts K, Zilles K, Golland P, Fischl B. IEEE Trans on Medical Imaging, 29:1424--1441, 2010 [pdf]
- The Organization of Local and Distant Functional Connectivity in the Human Brain.Sepulcre J, Liu H, Talukdar T, Martinocorena I, Yeo BTT, Buckner RL. PLoS Computational Biology, 6(6): e1000808. doi:10.1371, 2010 [pdf]
- Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration. Yeo BTT*, Sabuncu MR*, Vercauteren T, Ayache N, Fischl B, Golland P. IEEE Trans on Medical Imaging, 29:650--668, 2010 [pdf] [code] [39 cortical surfaces with accompanying anatomical parcellations]
- Evaluation of Volume-based and Surface-based Brain Image Registration Methods. Klein A, Ghosh S, Avants B, Yeo BTT, Fischl B, Ardekani B, Gee J, Mann JJ, Parsey RV. NeuroImage, 51:214–220, 2010 [pdf]
- DT-REFinD: Diffusion Tensor Registration with Exact Finite-Strain Differential. Yeo BTT, Vercauteren T, Fillard P, Peyrat J-M, Pennec X, Golland P, Ayache N, Clatz O. IEEE Trans on Medical Imaging, 28:1914--1928, 2009 [pdf] [code]
- Predicting the Location of Entorhinal Cortex from MRI. Fischl B, Stevens A, Rajendran N, Yeo BTT, Greve D, Van Leemput K, Polimeni J, Kakunoori S, Buckner RL, Pacheco J, Salat D, Melcher J, Frosch M, Hyman B, Grant PE, Rosen BR, van der Kouwe A, Wiggins G, Wald L, Augustinack J. NeuroImage, 47:8--17, 2009 [pdf]
- Effects of Registration Regularization and Atlas Sharpness on Segmentation Accuracy. Yeo BTT*, Sabuncu MR*, Desikan R, Fischl B, Golland P.Medical Image Analysis, 12:603--615, 2008 [pdf]
- On the Construction of Invertible Filter Banks on the 2-Sphere. Yeo BTT, Ou W, Golland P. IEEE Trans on Image Processing, 17:283--300, 2008 [pdf] [code]
- Cortical Folding Patterns and Predicting Cytoarchitecture. Fischl B, Rajendran N, Busa E, Augustinack J, Hinds O, Yeo BTT, Mohlberg H, Amunts K, Zilles K.Cerebral Cortex, 18:1973--1980, 2008 [pdf]
Peer-Reviewed Full-Length Conference Papers
- Is deep learning better than kernel regression for functional connectivity prediction of fluid intelligence? He T, Kong R, Holmes AJ, Sabuncu MR, Eickhoff SB, Bzdok D, Feng J, Yeo BTT. International Workshop on Pattern Recognition in Neuroimaging (PRNI), 2018 [pdf] Runner-Up, PRNI Best Paper Award
- Modeling Alzheimer’s disease progression using deep recurrent neural networks. Nguyen M, Alexander DC, Feng J, Yeo BTT. International Workshop on Pattern Recognition in Neuroimaging (PRNI), 2018 [pdf]
- Collapsed variational Bayesian inference of the author-topic model: application to large-scale coordinate-based meta-analysis. Ngo HG, Eickhoff SB, Fox P, Yeo BTT. International Conference on Pattern Recognition in Neuroimaging (PRNI), 1--4, 2016. [pdf]
- Task-Optimal Registration Cost Functions. Yeo BTT, Sabuncu M, Golland P, Fischl B. Proceedings of the International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 5761 of LNCS, 598--606, 2009. [pdf] Hamlyn Centre for Medical Robotics Travel Grant, Imperial College
- Supervised Non-Parametric Image Parcellation. Sabuncu MR, Yeo BTT, Van Leemput K, Fischl B, Golland P. Proceedings of the International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 5762 of LNCS, 1075-1083, 2009. [pdf]
- Asymmetric Image-Template Registration. Sabuncu MR, Yeo BTT, Van Leemput K, Golland P. Proceedings of the International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 5761 of LNCS, 565--573, 2009. [pdf]
- Nonparametric Mixture Models for Supervised Image Parcellation. Sabuncu MR, Yeo BTT, Van Leemput K, Fischl B, Golland P. Proceedings of the Medical Image Computing and Computer Assisted Intervention (MICCAI) workshop on Probabilistic Models for Medical Image Analysis (PMMIA), pages 301-313, 2009. [pdf]
- Spherical Demons: Fast Surface Registration. Yeo BTT, Sabuncu M, Vercauteren T, Ayache N, Fischl B, Golland P. Proceedings of the International Conference Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 5241 of LNCS, 745--753, 2008 [pdf] [code] Runner-Up, MICCAI Young Scientist Award
- Shape Analysis with Overcomplete Spherical Wavelets. Yeo BTT, Yu P, Grant PE, Fischl B, Golland P. Proceedings of the International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 5241 of LNCS, 468--476, 2008 [pdf] [code]
- DTI Registration with Exact Finite-Strain Differential. Yeo BTT, Vercauteren T, Fillard P, Pennec X, Golland P, Ayache N, Clatz O. Proceedings of the International Symposium on Biomedical Imaging: From Nano to Macro (ISBI), 700--703, 2008. [pdf][code] NIH ISBI Travel Grant
- Effects of Registration Regularization and Atlas Sharpness on Segmentation Accuracy. Yeo BTT, Sabuncu MR, Desikan R, Fischl B, Golland P. Proceedings of the International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 4791 of LNCS, 683--691, 2007. [pdf] MICCAI Young Scientist Award & MICCAI Young Investigator Publication Impact Award
- What Data to Co-register for Computing Atlases. Yeo BTT, Sabuncu MR, Mohlberg H, Amunts K, Zilles K, Golland P, Fischl B. Proceedings of the Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA), International Conference on Computer Vision, 2007. [pdf]
- Cortical Folding Development Study based on Over-complete Spherical Wavelets. Yu P, Yeo BTT, Grant PE, Fischl B, Golland P. Proceedings of the Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA), International Conference on Computer Vision, 2007. [pdf] [code]
- Invertible Filter Banks on the 2-Sphere. Yeo BTT, Ou W, Golland P. Proceedings of the International Conference on Image Processing (ICIP), 2161--2164, 2006 [pdf] [code]
Theses, Book Chapters & Unpublished Reports
- Best practices in data analysis and sharing in neuroimaging using MRI. Nichols TE, Das S, Eickhoff SB, Evans AC, Glatard T, Hanke M, Kriegeskorte, Milham MP, Poldrack RA, Poline JB, Proal E, Thirion B, Van Essen DC, White T, Yeo BTT. [free download]
- Functional connectivity parcellation of the human brain. Schaefer AL, Kong R, Yeo BTT. In: Guorong Wu, Dinggang Shen, Sabuncu MR, editors. Machine Learning and Medical Imaging. Academic Press: Elsevier, pp. 3-29, 2016 [pdf] [amazon]
- Automatic labeling of the human cerebral cortex. Yeo BTT. In: Arthur W. Toga, editor. Brain Mapping: An Encyclopedic Reference. Academic Press: Elsevier, vol 1, pp. 357-363, 2015 [pdf] [amazon]
- Learning task-optimal image registration with applications in localizing structure and function in the cerebral cortex. Yeo BTT. Ph.D. Thesis, Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, February 2010. [high res 33MB pdf, low res 7MB pdf]